@rsimmons1122 - Thanks again for the guidance.
After thorough testing with the high polling rate, still wasn't able to find anything conclusive. We ended up pulling off the AMS Intake Manifold, re-installing the stock TGV and Intake Manifold (Keeping the ID1050x, Rails, FPR, and SF Intake); redid the tune; and wow, I have a running car with no misfires. Taking it out this weekend for some long cruise stretches to get the MAF scaling just right, but after a week of commuting, LTFT are +/-3%.
I have some theories on the culprit of the source of the roughness (related to the AMS) but taking a break, enjoying the car, and zeroing in on the MAF Scaling/Comp for now, it's been on the lift for a LONG time.
May start a new thread on the AMS if others are interested.
Closing the loop on the thread, and happy to have the car back.

SeLduM